Wireless Accelerometer for Neonatal MRI Motion Artifact Correction

A wireless accelerometer has been used in conjunction with a dedicated 3T neonatal MRI system installed on a Neonatal Intensive Care Unit to measure in-plane rotation which is a common problem with neonatal MRI. Rotational data has been acquired in real-time from phantoms simultaneously with MR images which shows that the wireless accelerometer can be used in close proximity to the MR system. No artifacts were observed on the MR images from the accelerometer or from the MR system on the accelerometer output. Initial attempts to correct the raw data using the measured rotational angles have been performed, but further work will be required to make a robust correction algorithm

Magnetic Resonance Imaging to Enhance the Diagnosis of Fetal Brain Abnormalities in utero

Purpose This thesis aims to determine the diagnostic performance of in utero MR (iuMR) imaging to diagnose fetal brain abnormalities and describes the development, application and processing of a 3D volume MR acquisition. Methods A systematic review and meta-analysis of existing evidence was conducted. A prospective multicentre study of pregnant women, with a fetal brain abnormality on ultrasound (USS), was undertaken – The MERIDIAN study. In addition, an investigation of fetuses with no brain abnormality on USS was undertaken. Diagnostic accuracy and confidence, as well as positive and negative predictive values, were calculated. A 3D image acquisition technique was introduced, its ability to aid diagnosis measured and computational post-processing applied. Fetal brain volumes were extracted from the 3D data using image segmentation and these were assessed for reproducibility and validity. Resultant data allowed 3D models of fetal brains to be printed. Normally developing fetal brain volumes were plotted graphically thereby allowing comparison with abnormal fetuses. Results A total of 570 complete datasets were available from 903 eligible participants. Diagnostic accuracy was 68% for USS and 93% for iuMR. 95% of diagnoses made by iuMR were reported with high confidence compared to 82% on USS. Changes in pregnancy management occurred in 33% of cases. Positive and negative predictive values of iuMR were 93% and 99.5% respectively. 3D image quality was diagnostic in 89.6%, of which 91.4% gave an accurate diagnosis. Intra- and inter-observer agreement of brain volume measurements was high. Agreement between computer based and brain model volume measurements was also high. Conclusions iuMR imaging improves diagnostic accuracy and confidence for fetal brain abnormalities, influencing pregnancy management in a high proportion of cases. 3D imaging enables versatile visualisation of fetal brain anatomy and reliable extraction of volumes. This additional quantitative information could improve diagnosis in relevant cases

Single-Input Multi-Output U-Net for Automated 2D Foetal Brain Segmentation of MR Images

In this work, we develop the Single-Input Multi-Output U-Net (SIMOU-Net), a hybrid network for foetal brain segmentation inspired by the original U-Net fused with the holistically nested edge detection (HED) network. The SIMOU-Net is similar to the original U-Net but it has a deeper architecture and takes account of the features extracted from each side output. It acts similar to an ensemble neural network, however, instead of averaging the outputs from several independently trained models, which is computationally expensive, our approach combines outputs from a single network to reduce the variance of predications and generalization errors. Experimental results using 200 normal foetal brains consisting of over 11,500 2D images produced Dice and Jaccard coefficients of 94.2 ± 5.9% and 88.7 ± 6.9%, respectively. We further tested the proposed network on 54 abnormal cases (over 3500 images) and achieved Dice and Jaccard coefficients of 91.2 ± 6.8% and 85.7 ± 6.6%, respectively

CIV 1549 as an Eigenvector 1 Parameter for Active Galactic Nuclei

[Abridged] We have been exploring a spectroscopic unification for all known types of broad line emitting AGN. The 4D Eigenvector 1 (4DE1) parameter space shows promise as a unification capable of organizing quasar diversity on a sequence primarily governed by Eddington ratio. This paper considers the role of CIV 1549 measures with special emphasis on the CIV 1549 line shift as a principal 4DE1 diagnostic. We use HST archival spectra for 130 sources with S/N high enough to permit reliable CIV 1549 broad component (BC) measures. We find a CIV 1549 BC profile blueshift that is strongly concentrated among (largely radio-quiet: RQ) sources with FWHM(H beta BC) < 4000 km/s (which we call Population A). Narrow line Seyfert 1 (NLSy1, with FWHM H beta < 2000 km/s) sources belong to this population but do not emerge as a distinct class. The systematic blueshift, widely interpreted as arising in a disk wind/outflow, is not observed in broader lined AGN which we call Population B. We find new correlations between FWHM(CIV 1549 BC) and CIV 1549 line shift as well as the equivalent width of CIV 1549. They are seen only in Pop. A sources. CIV 1549 measures enhance the apparent dichotomy at FWHM(Hbeta BC) approx. 4000 \kms\ (Sulentic et al. 2000) suggesting that it has more significance in the context of Broad Line Region structure than the more commonly discussed RL vs. RQ dichotomy. Black hole masses computed from FWHM CIV 1549 BC for about 80 AGN indicate that the CIV 1549 width is a poor virial estimator. Comparison of mass estimates derived from Hbeta BC and CIV 1549 reveals that the latter show different and nonlinear offsets for population A and B sources. A significant number of sources also show narrow line CIV 1549 emission. We present a recipe for CIV 1549 narrow component extraction.Comment: Accepted for publication in the Astrophysical Journa

Stability of Single Particle Tracers for Differentiating Between Heavy- and Light-Duty Vehicle Emissions

To determine the size and chemical composition of particles derived from on-road vehicle emissions, individual particles were sampledcontinuously with an aerosol time-of-flight mass spectrometer (ATOFMS) at the Caldecott Tunnel in Northern California. In this tunnel, traffic is segregated, such that in theory only light duty vehicle emissions or a mix of heavy- (HDV) and light-duty vehicle (LDV) emissions can be sampled separately. Two studies were carried out, one in November 1997 anda secondin July 2000, time periods with average ambient temperatures of 10–15 and 26–32 1C, respectively, with the instrument operating at ambient outdoor temperatures. Analysis of the chemical composition of the particles sampled in these studies shows that sampling conditions can strongly impact the determination of suitable markers for identifying particles emitted from different vehicle types during ambient studies

Annoyance due to air pollution in Europe

Background Annoyance due to air pollution is a subjective score of air quality, which has been incorporated into the National Environmental monitoring of some countries. The objectives of this study are to describe the variations in annoyance due to air pollution in Europe and its individual and environmental determinants. Methods This study took place in the context of the European Community Respiratory Health Survey II (ECRHS II) that was conducted during 1999-2001. It included 25 centres in 12 countries and 7867 randomly selected adults from the general population. Annoyance due to air pollution was self-reported on an 11-point scale. Annual mean mass concentration of fine particles (PM2.5) and its sulphur (S) content were measured in 21 centres as a surrogate of urban air pollution. Results Forty-three per cent of participants reported moderate annoyance (1-5 on the scale) and 14% high annoyance (≥6) with large differences across centres (2-40% of high annoyance). Participants in the Northern European countries reported less annoyance. Female gender, nocturnal dyspnoea, phlegm and rhinitis, self-reported car and heavy vehicle traffic in front of the home, high education, non-smoking and exposure to environmental tobacco smoke were associated with higher annoyance levels. At the centre level, adjusted means of annoyance scores were moderately associated with sulphur urban levels (slope 1.43 μg m−3, standard error 0.40, r = 0.61). Conclusions Annoyance due to air pollution is frequent in Europe. Individuals' annoyance may be a useful measure of perceived ambient quality and could be considered a complementary tool for health surveillanc

Systematic review of lung function and COPD with peripheral blood DNA methylation in population based studies

Background Epigenetic variations in peripheral blood have potential as biomarkers for disease. This systematic review assesses the association of lung function and chronic obstructive pulmonary disease (COPD) with DNA methylation profiles in peripheral blood from population-based studies. Methods Online databases Medline, Embase, and Web of Science were searched. Google Scholar was searched to identify grey literature. After removing duplicate articles, 1155 articles were independently screened by two investigators. Peer reviewed reports on population-based studies that examined peripheral blood DNA methylation in participants with measured lung function (FEV1, FEV1/FVC ratio) or known COPD status were selected for full-text review. Six articles were suitable for inclusion. Information regarding study characteristics, designs, methodologies and conclusions was extracted. A narrative synthesis was performed based on published results. Results Three of the six articles assessed the association of COPD with DNA methylation, and two of these also included associations with lung function. Overall, five reports examined the association of lung function with DNA methylation profiles. Five of the six articles reported ‘significant’ results. However, no consistent CpG sites were identified across studies for COPD status or lung function values. Conclusions DNA methylation patterns in peripheral blood from individuals with reduced lung function or COPD may be different to those in people with normal lung function. However, this systematic review did not find any consistent associations of lung function or COPD with differentially methylated CpG sites. Large studies with a longitudinal design to address reverse causality may prove a more fruitful area of research